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Compound Evidence InstituteEvidence synthesis · established 2023Graded assessments of compounds, trials, methods and supply
Document set current to 30 July 2026
Methodological standard · §4

CEI-MS-19 — procedure

Step-by-step procedure for purity determination for peptides not retained by conventional reverse-phase….

Document identifier
CEI-MS-19/4
Series
Methodological standard
Version
1.0
Published
20 Mar 2025
Last reviewed
20 Dec 2025
Next review
20 Dec 2028
Identifier
10.71829/cei.meth.16
Certainty
High
Cycle
2025 Q1
Category
Chromatographic purity

§4Procedure

The procedure below is written in the second person, which is the only place in the Institute's document set where that register is used. A procedure is an instruction and is written as one.

  1. Determine the retention factor of the analyte under CEI-MS-01 conditions. Where k is below 1.0, that method is not applicable and this standard applies.
  2. Select a mechanism. For a small basic peptide, ion-pairing reverse phase. For a small acidic or highly polar peptide, hydrophilic-interaction chromatography. For a very short peptide with sequence-scrambled isomers to resolve, ion-exchange or a mixed-mode phase.
  3. Optimise for a retention factor between 2 and 10 for the main peak.
  4. Demonstrate that the method separates the analyte from at least two known related substances with resolution ≥ 1.5. Where authentic impurity standards are unavailable, generate them by forced degradation under CEI-MS-13.
  5. Confirm that the injection disturbance is fully resolved from the main peak, and state the retention time of both.
  6. Determine purity as in CEI-MS-01, with the integration window stated.
  7. Report the mechanism used, the retention factor achieved, and the resolution demonstrated against known related substances.

References cited on this page

References are numbered in order of first citation in this document. Each superscript in the text links to its entry below.

  1. European Directorate for the Quality of Medicines & HealthCare. General Chapter 2.2.29 Liquid Chromatography. European Pharmacopoeia 2023;11th edition. identifier not held by the Institute

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